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Identifying Genes for Mendelian Traits using Next Generation Sequence Data

Sept 28-Oct 2, 2015, Max Delbrück Center (MDC) for Molecular Medicine, Berlin, Germany

General Information

Emphasis in this course is on strategies for gene mapping and variant/gene identification for Mendelian Traits. It will include theory as well as practical exercises. The exercises will be carried out using a variety of computer programs (e.g. Gemini, GeneHunter, GERP, Homozygosity Mapper, Integrative Genome Viewer, MERLIN, PhyloP, PolyPhen, SEQLinkage, Variant Mendelian Tools,) and with pencil and paper. TOPICS include: study design; linkage analysis and homozygosity mapping using genotype array and next generation sequence data (exome and whole genome), haplotype reconstruction, evaluating pedigree informativeness and power to detect linkage, identification of causal variants using filter approaches, variant annotation, evaluation of deleterious effects of variants and their functionality

Course Schedule
Link to Berlin hotel tax exemption form
Direction to the MDC Campus
Direction to the classroom


MDC - communication center (Building C83 on the Campus Map)
Room Axion 2 

The building is red and stands across the street from the campus bus stop and the blue bear.

MDC C.jpg

Course Instructors

The organizers and instructors for the course are Suzanne Leal (Baylor College of Medicine) and Michael Nothnagel (University of Cologne).


Downloads for Course

Commands for Computer Exercises

Exercise Output

Course Slides

Data Sets

Software Links


Bioinformatic Tools